PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YS3WM
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 229aa    MW: 26660 Da    PI: 6.0258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YS3WMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.66.8e-38521711128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ ++ ae k+wy++s+r +        +r+t++gyWkatg +++v+++ ++
  Araip.YS3WM  52 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQ--------SRVTENGYWKATGMEEPVMTSsTN 140
                  79*************************999.99**************97777889*******9854........799****************98677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vg+kk +vf+ g++p++ kt+W+m+ey l
  Araip.YS3WM 141 KRVGIKKYFVFHLGESPSAIKTNWIMQEYCL 171
                  88***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4847198IPR003441NAC domain
PROSITE profilePS5100546.53152199IPR003441NAC domain
PfamPF023653.2E-2253171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
AWVSRQHPYY KYLSFSICTI NTTHLHHYSN LTHSLLLFSL PIFLMGDNNV NLPPGFRFYP  60
TDEELVVHFL HRKAALLPCH PDVIPDLDLY PYDPWELDGR ALAEGKQWYY YSRRTQSRVT  120
ENGYWKATGM EEPVMTSSTN KRVGIKKYFV FHLGESPSAI KTNWIMQEYC LSDYSASSSR  180
SSKRKSDYSK WVICRVYERN GDDDDGTELS CLDEVFLSLD DLDEISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-414820013166NO APICAL MERISTEM PROTEIN
1ut4_B8e-414820013166NO APICAL MERISTEM PROTEIN
1ut7_A8e-414820013166NO APICAL MERISTEM PROTEIN
1ut7_B8e-414820013166NO APICAL MERISTEM PROTEIN
3swm_A8e-414820016169NAC domain-containing protein 19
3swm_B8e-414820016169NAC domain-containing protein 19
3swm_C8e-414820016169NAC domain-containing protein 19
3swm_D8e-414820016169NAC domain-containing protein 19
3swp_A8e-414820016169NAC domain-containing protein 19
3swp_B8e-414820016169NAC domain-containing protein 19
3swp_C8e-414820016169NAC domain-containing protein 19
3swp_D8e-414820016169NAC domain-containing protein 19
4dul_A8e-414820013166NAC domain-containing protein 19
4dul_B8e-414820013166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472389e-49KC847238.1 Gossypium hirsutum NAC domain protein NAC61 mRNA, complete cds.
GenBankKJ8018189e-49KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179211.11e-137PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK63e-91NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0B2QYJ11e-109A0A0B2QYJ1_GLYSO; NAC domain-containing protein 48
TrEMBLI1KUF31e-109I1KUF3_SOYBN; Uncharacterized protein
STRINGGLYMA08G19300.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-86xylem NAC domain 1